Matlab Index

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Starting TIGER COBRA Model Conversion Flux Balance Analysis Data Integration Model Creation and Modification Model Solution Model Verification

Matlab Directories

Matlab Files found in these Directories

about_tiger dare make_expr showif
add_column decompose_gpr make_milp single_gene_ko
add_constraint diffadj make_rxnGeneMat solve_mip
add_diff enzyme_coupling make_tiger_doc solve_multiple_mips
add_growth_constraint eva map solve_tiger
add_obj_constraint expand_to map_genes_to_rxns splitstr
add_row expr mapcols stack
add_rule extract_cobra maprows stackcounter
argf fast_fva max_abs start_tiger
argmax fast_fva2 mea statusbar
argmin fba minimal_genome strbuffer
array2names fill_to miqp_type struct2list
assert_cell find_associated_rules moma test__add_constraint
assert_tiger find_conditions near test__add_diff
average_by_subsystem find_cores open_bounds test__create_table
bind_mets find_exchange_rxns optree test__diffadj
bind_var find_infeasible_rows parse test__enzyme_coupling
bounds_to_constraints find_infeasible_rules parse2 test__fba
cellfilter find_like parse_string test__find_infeasible_rules
celliter find_optimal_states printbuffer test__find_optimal_states
cellzip flatten remove_column test__gimme
cellzipn fva remove_null_rules test__imat
check_field get_cplex_flag remove_rev_cons test__indicators
check_mip get_glpk_flag remove_row test__linalg
check_tiger get_solver remove_rule test__made
check_transition_matrix get_solver_options restore_rev_cons test__miqp
clear_solver_options gimme scale_bounds test__multilevel
close_bounds gimme_imat_made_examples scanfile test__parse2
cmpi hash set_cplex_opts test__remove_rule
cobra_model iif set_fieldval test__solve_multiple_mips
cobra_model_extended imat set_glpk_opts test__tile_mip
cobra_to_elf init_test set_gurobi_opts test_gurobi_mex
cobra_to_tiger int2bin set_solver test_tiger
convert_gpr is_valid_expr set_solver_option textframe
convert_grRules is_valid_rule set_var tile_mip
convert_ids joinstr show_exchange_rxns token
convert_indicators lex show_made_results tutorial_model
convert_miqp linalg show_mip update_rule
count made show_padded verify_sol
create_empty_tiger make_c_matrix show_sol write_csv
create_table make_dnf show_tiger

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